YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89342053, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.76
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAAEGSSGC RPGPPGNRRR RLQILIAGLL IGLFGAVLAL PGTAGAEGET YTVATDTTFA  60
   61 PFEFQDASGE FVGIDMDLIR AIAEDQGFTV DIKPLGFDAA LQAVQANQVD GVIAGMSITE 120
  121 ERKKVFDFSE PYFESGIQMA VLEDNEDITS YEDLRGQRVS VKNGTQGSDF ANSIKDQYGF 180
  181 EVVSFADSST MFDEVKTGNS VAVFEDYPVL LYGIAQGNGF KTVTPKEDPT GYGFAVNKGQ 240
  241 NAELLQKFND GLENLKAQGR YDEILQTYLG EEAAESDDSL FGLIKSTSPM LLAGLKMTII 300
  301 LTVVSIFFAL ILGVIFGLAR VSRSIWLRAI GTTFVDIFRG TPLLVQAFFI YFGIPATMGF 360
  361 QMSAVTAGII TLSLNAGAYM TEIVRGGILS VDKGQMEAAR SLGIGYLPTM RKVILPQAIR 420
  421 TMIPSYINQF VITLKDTSIL SVLGIAELTQ SGRIIIAGNY KAFEMWLIVG VIYFIVIMAL 480
  481 TKLSDRLERR LVK

Type	Start	End	Confidence
Signal Peptide	1	46	0.74
N-region	1	37
H-region	38	43
C-region	44	46
Cleavage Site	46	47
Non-Cytoplasmic	47	296	0.98
Transmembrane Helix	297	318	0.94
Cytoplasmic	319	334	0.69
Transmembrane Helix	335	354	0.77
Non-Cytoplasmic	355	357	0.57
Transmembrane Helix	358	379	0.76
Cytoplasmic	380	431	0.70
Transmembrane Helix	432	446	0.51
Non-Cytoplasmic	447	461	0.62
Transmembrane Helix	462	483	0.89
Cytoplasmic	484	493	0.81