YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145224452, gi...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRATGLISEF GVDASLFVSH GLCTPHGILR NAQFGRVFRR PGVRTVLSRG CARSQSASLG  60
   61 FPAASKVPRG PLRLDDAGWR PRNRLVAWGF RVGICRSATR EPTPHAYGPV FKRHLPGYPS 120
  121 AGRGPSEEQN MIGTIIGAIV VGLIVGALAR LVMPGKQNMG VLMTIVLGAL GSFLGTWITY 180
  181 TLGYSNSNGG FEVIPFLVGI IVAIALIAAY LGITGRRGTR PRV

Type	Start	End	Confidence
Non-Cytoplasmic	1	130	0.87
Transmembrane Helix	131	152	0.93
Cytoplasmic	153	159	0.85
Transmembrane Helix	160	181	0.93
Non-Cytoplasmic	182	192	0.82
Transmembrane Helix	193	214	0.94
Cytoplasmic	215	223	0.94