YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89319002, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.96
Transmembrane Helix	23	43	0.92
Non-Cytoplasmic	44	53	0.81
Transmembrane Helix	54	74	0.93
Cytoplasmic	75	94	0.85
Transmembrane Helix	95	114	0.95
Non-Cytoplasmic	115	121	0.85
Transmembrane Helix	122	143	0.91
Cytoplasmic	144	151	0.86
Transmembrane Helix	152	174	0.91
Non-Cytoplasmic	175	193	0.87
Transmembrane Helix	194	212	0.97
Cytoplasmic	213	232	0.90
Transmembrane Helix	233	253	0.92
Non-Cytoplasmic	254	269	0.78
Transmembrane Helix	270	290	0.90
Cytoplasmic	291	297	0.81
Transmembrane Helix	298	320	0.89
Non-Cytoplasmic	321	326	0.74
Transmembrane Helix	327	348	0.90
Cytoplasmic	349	368	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQVESGPD HAVVGKLSTL DRFLPVWIIA AMIAGLLLGR MVPGFDTALN SAQVQGISIP  60
   61 IAVGLLVMMY PVLAKVRYDR LGTVTGDRRL LVSSLVLNWV LGPALMFALA WLLVPDLPEY 120
  121 RTGLIIVGLA RCIAMVIIWN DLACGDREAA AVLVALNSLF QVVMFAVLGW FYLAVLPGWL 180
  181 GLETASIDAS PWEIAQSVLI FLGIPLLAGY LTRRLGEKAK GRTWYETRFL PRIGPWALYG 240
  241 LLFTIVVLFA LQGQQITSRP LDVARIALPL LVYFAVMWGG GYLLGAALGL GYRRTTTLAF 300
  301 TAAGNNFELA IAVCIATYGA TSGQALAGVV GPLIEVPVLV ALVYVSLFLR RRFHAGSDNR 360
  361 PREDATDG