YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89319565, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKQAGKRSG LGRGLASLIP TGPVESGESA TLGPKMGGAA ADVLLGGAPA PAQTDTNPAG  60
   61 AVYREIAPSQ IDPNPRQPRQ VFDEEALAEL VHSIREFGLM QPIVVRAVPV DGDESPRYQL 120
  121 VMGERRWRAA QQAGVATIPA IVRETADDNL LRDALLENIH RVQLNPLEEA AAYQQLLEEF 180
  181 EVTHEELASR IGRSRPLITN MIRLLRLPIP VQRRVAAGVL SAGHARALLS LDGGPEVQEE 240
  241 LAARIVAEGL SVRATEEAVT LANRNGTTPP AAPRRKPIQM PGLQDVAEQL STAFDTRVTV 300
  301 SLGKRKGKIV VEFGSVDDLQ RIVELMNASQ A

Type	Start	End	Confidence
Signal Peptide	1	26	0.75
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	331	0.99