YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|145223574, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	50	0.93
Transmembrane Helix	51	74	0.87
Non-Cytoplasmic	75	88	0.87
Transmembrane Helix	89	108	0.90
Cytoplasmic	109	117	0.78
Transmembrane Helix	118	139	0.93
Non-Cytoplasmic	140	155	0.74
Transmembrane Helix	156	176	0.80
Cytoplasmic	177	186	0.81
Transmembrane Helix	187	204	0.95
Non-Cytoplasmic	205	210	0.62
Transmembrane Helix	211	227	0.57
Cytoplasmic	228	230	0.45
Transmembrane Helix	231	252	0.86
Non-Cytoplasmic	253	316	0.60
Transmembrane Helix	317	336	0.91
Cytoplasmic	337	346	0.90
Transmembrane Helix	347	371	0.81
Non-Cytoplasmic	372	380	0.69
Transmembrane Helix	381	402	0.85
Cytoplasmic	403	506	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNILSRLRH RRANPAADTG TTVTSGAAAT SDAVLRLPRT RVGAWLGRPM TSFHLIVAVT  60
   61 ALLITMGLTM VLSASGVYSY DQDGSPWSVF TKQVLWTVIG LFAFYVALRT PVAVMRRFAF 120
  121 TGFAFSIVLL VLVLIPGIGK VANGSRGWFV VAGFSMQPSE LAKIALAIWG AHLLAARRME 180
  181 HASLREMLVP LVPAAVIALA LIVLQPDLGQ TLSMGVILLG LLWYAGLPLR VFLTSLGAVL 240
  241 VSGVILALAE GYRSARVQSW LNPTADAQGS GYQGRQARYA LANGGFFGDG LGQSTAKWNY 300
  301 LPNAHNDFIF AIIGEELGFV GAVGLLLLFG LFAYTGMRIA RRSADPFLRL LTATATLWIL 360
  361 SQVFINVGYV VGLLPVTGLQ LPLISSGGTS TATTLLMIGI MANAARHEPE AVAALRAGRD 420
  421 DRVNRILRLP LPAPYVPSRT EALRDRLRTK PEKKKAGKRP EKKPARARAA QSARHPVRSG 480
  481 RSSDGYGDGR RNQGRRARTM EGQRYG