YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|219992178, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLNYSRKII FLALIVLLIV VFILSLAVGS VHIPIHQIWA IILDHADSNE TYKIIIKDIR  60
   61 LPRIILSFLV GSALAVSGVV FQGVIRNPMV DPYIIGVSAG AGTAVTLAIL FNWSITFLWF 120
  121 DTMPIMAFLG SLLTIFTVYR MARVNKKTPV TTFLLAGVAV GFLLNAVMSF LMVFVTGDLY 180
  181 KVVYWLMGSL ITEGWKEVKI IVPYYILGLI PVVFYLKDLN ILLLGEESAH NLGVNVERVK 240
  241 SILIFSGALL TAAAVSVSGI IGFIGLIVPH ISRLIIGPDH RRLLPFSWLL GGLFLVVSDD 300
  301 LARTLIKPSE IPVGIITALV GAPYFIYLLK KKKDNLW

Type	Start	End	Confidence
Cytoplasmic	1	8	0.97
Transmembrane Helix	9	33	0.90
Non-Cytoplasmic	34	63	0.93
Transmembrane Helix	64	85	0.93
Cytoplasmic	86	92	0.86
Transmembrane Helix	93	113	0.93
Non-Cytoplasmic	114	121	0.64
Transmembrane Helix	122	142	0.89
Cytoplasmic	143	151	0.85
Transmembrane Helix	152	175	0.91
Non-Cytoplasmic	176	241	0.76
Transmembrane Helix	242	268	0.82
Cytoplasmic	269	282	0.66
Transmembrane Helix	283	302	0.84
Non-Cytoplasmic	303	310	0.66
Transmembrane Helix	311	329	0.92
Cytoplasmic	330	337	0.86