YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89210870, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYNGIGLII LFILSGFFSG AETALMSVNR IRIKELANQG DKRARLVDSL LNNKTRLLTT  60
   61 ILIGNNLVNI WASAIATSIA ISLFGNKGVG IATGVVTLLV LIFGEITPKA MGSKKAVRYS 120
  121 KFSSIYLYWL ERVLYPVVVF FEYLIKIFVD NEDLLSSKLL SEEEIKRFVN VSEEEGVIKT 180
  181 DERRMINSIF EFDDTTVKEI MVPRIDMVCI KSDTELSEVI KIAVDRGHSR IPVYKNTIDE 240
  241 IIGVVYVKDL LGYLTKPEND ARLADFIRSP YYVPESKKIN ELLTEMKKKK VHMAIVLDEY 300
  301 GGTSGLVTIE DILEEIVGDI QDEYDTEPSQ IEFINDKELL IDARVDIDDL NEILPEPLPG 360
  361 EEDYETISGF ILHYLGYVPK TGEELELDGL HILVEESSKH QIKKVRLKSS TKLNRIKEGG 420
  421

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.92
Transmembrane Helix	6	26	0.91
Cytoplasmic	27	60	0.88
Transmembrane Helix	61	81	0.87
Non-Cytoplasmic	82	88	0.69
Transmembrane Helix	89	108	0.90
Cytoplasmic	109	127	0.85
Transmembrane Helix	128	147	0.62
Non-Cytoplasmic	148	420	0.70