YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89210719, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILKWFYPG IGIKRWLFLV LLGLMLIWSG IIILIGDKMI FLINRYIGTY FVINSVVARV  60
   61 ILAVIIIVLG VILIGESIKG AIRTFTRDNR EGDELIDKLY RTKMLEKGPR IVALGGGTGL 120
  121 STLLRGLKEY TSNITAIVTV ADDGGSSGRL RDELGMLPPG DIRNCLVALA DTEPLMERLF 180
  181 QYRFRADGTL DGHSFGNLFI ASMTEVLGDF EQAVKESSKV LAIKGQVLPA TNEDVRLGAV 240
  241 YSDNTVRMGE SSIPREHKKI KRVFLQPGAC RPTDDALNAI RQADIIIIGP GSLYTSIMPN 300
  301 LLIKGIAEEI KNSTALKMYI SNVMTQPGET TGYRTSDHIQ AIIDHVGNGL FDYVVVNTGD 360
  361 IPKNLAQKYK MEGSYPVKVD RKKVLSQGVN IIKGDLLSRD GYIRHDPSKL AETILKVYRG 420
  421 R

Type	Start	End	Confidence
Cytoplasmic	1	15	0.86
Transmembrane Helix	16	36	0.95
Non-Cytoplasmic	37	54	0.77
Transmembrane Helix	55	75	0.92
Cytoplasmic	76	421	0.61