YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|220931536, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTKKEIIAM LLAGGQGTRL GVLTKNLAKP AVPFGGEYRI IDFPLSNCAN SGIDTVGVLT  60
   61 QYKPLVLNSY IGIGSSWDLD RKSGGVTVLP PFVRENGGEW YKGTANAIYQ NTEFIELYDP 120
  121 DYLLVLSGDH IYKMDYSLLL DYHKEKNADA TISVIEVPWK ETSRFGIMVT DDNKKIIEFQ 180
  181 EKPEEAKSNL ASMGIYIFNW NMLKEYLDNS QESIDFGKHI IPRMLNDNRN LFAYHYKSYW 240
  241 KDVGTINSYW EAHMDLLKDP SRLNLYDKFW PIYSVNPNKP PMYIGKNGLI KRSLINKGSE 300
  301 VFGRVEESVV FFDVFIGNKA RIKESVIMPR VKIGKNTIIE KTIICGDVTI GKNCRIGVDL 360
  361 GGNQKSGVTV IGEFSNIPDN TIIKKGEVIE

Type	Start	End	Confidence
Signal Peptide	1	21	0.77
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	390	0.99