YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|163939964, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLSNIGVA LFFIAFILLI LCIISFFKKN GKAKQYGRPT VILFMISIVL IITGAETSNH  60
   61 PIVEFFSILS FVLFIFFLVL AILSVIKQTG VAKKQFIITA ILFVIFVVLL GISGPSSEKT 120
  121 TATNKQVASN SEEKKDDEKK KEVEKKEADE KARKQQEDEK RQAEEQALKQ EDEKRLADEQ 180
  181 ARKQQEEQKR LADEQARKQQ EEQKRLADEQ ARKQQEEQKR QADEQARKQQ EEQKRQADEQ 240
  241 ARKQQEEQKR QADEQARKQQ EEQKRQADEQ ARKQQEDQQK VQQAQTQPAA GNNSNVTYKN 300
  301 CTEVKNAGKA PLYRDQPGYS SKLDRDGDRV ACEK

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.94
Transmembrane Helix	7	27	0.96
Cytoplasmic	28	35	0.92
Transmembrane Helix	36	55	0.92
Non-Cytoplasmic	56	64	0.72
Transmembrane Helix	65	86	0.93
Cytoplasmic	87	95	0.88
Transmembrane Helix	96	114	0.97
Non-Cytoplasmic	115	334	0.99