YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89153220, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIKRQKMLR LSLSYLVIFI MCAIIFYPLL WIIGSSFNPG DSLSGSSIIP KNATLDHYRK  60
   61 LLDLDSSNYL LWYKNTLKVS VMTMIFSVLA ISFTAYAFSR YRFVGRKNGL LTFLILQMIP 120
  121 NFAALIALYV LAQLTGLIDT HLALILIYVG GAIPMNTWLM KGYFDTIPKE LDESARMDGA 180
  181 GHFRIFWQII MPLAKPIVAV VALFTFIGPF TDFILASIIL RTPENYTLAV GLYEMVAKKF 240
  241 GNEFTTFAAG SVLIAIPISI LFLSLQKYFI SGLTAGGTKG

Type	Start	End	Confidence
Cytoplasmic	1	10	0.97
Transmembrane Helix	11	33	0.91
Non-Cytoplasmic	34	78	0.95
Transmembrane Helix	79	98	0.96
Cytoplasmic	99	109	0.84
Transmembrane Helix	110	132	0.92
Non-Cytoplasmic	133	139	0.80
Transmembrane Helix	140	160	0.91
Cytoplasmic	161	184	0.93
Transmembrane Helix	185	208	0.79
Non-Cytoplasmic	209	243	0.80
Transmembrane Helix	244	265	0.89
Cytoplasmic	266	280	0.79