YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|163941193, gi...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENTSPSREK KNKRKYKKTT IISVLLGVLL FGGVGYGAYV YMKTSNLVQK SNLNLSRGEK  60
   61 SNLREKAVKP ITHNVSMLIM GIDENQERQK GYNGAFHTDA LLLATFNKED KTVKLTSIPR 120
  121 DTYTYVPIEK KKDKITHAYG SGFVKNGKDG GPQASVEAVE KLLQVPVDYF VKFNFGSFIK 180
  181 IVDGLDGVEV DVPVEFTEQN SKDEPDTIHL KKGVQKLTGE EALALARTRH IDSDAMRGQR 240
  241 QQLVIEAILS KLKSVGSITK LEKMVEAVDG DFKTNLALDD ILSFYKYGLD CSVEKIQLNG 300
  301 DDLYLPNGQN GKRVYYYNPN KKDLQNLSNT LRTHLGLSEK QIEGN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	42	0.84
Non-Cytoplasmic	43	345	0.99