YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|163941560, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQRIITGVI AAALFIPIVI YGGVPFTVLV YALASIGLYE LIRMNKLTLI SVPTVLAAVL  60
   61 LWIILIPSSA SELFTWIGLG KLEITFVIVL LLLSYTVLSK NTFTFDNASF LLMATTYVGM 120
  121 GFLYLNETRI LGIKYVFCAL FVIWATDSGA YFIGKAFGKR KLWPEISPNK TIEGSLGGIV 180
  181 CGIVVALVYN MFFPVEANVG VLIVLTIIIS IFGQIGDLVQ SAFKRHYGVK DSGTILPGHG 240
  241 GILDRTDSWL FVLPILYFLL QYN

Type	Start	End	Confidence
Non-Cytoplasmic	1	8	0.71
Transmembrane Helix	9	35	0.82
Cytoplasmic	36	46	0.62
Transmembrane Helix	47	66	0.95
Non-Cytoplasmic	67	73	0.62
Transmembrane Helix	74	98	0.83
Cytoplasmic	99	104	0.64
Transmembrane Helix	105	125	0.84
Non-Cytoplasmic	126	130	0.79
Transmembrane Helix	131	154	0.88
Cytoplasmic	155	171	0.82
Transmembrane Helix	172	193	0.88
Non-Cytoplasmic	194	198	0.75
Transmembrane Helix	199	219	0.90
Cytoplasmic	220	263	0.74