YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|163938623, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.82
Transmembrane Helix	6	24	0.94
Cytoplasmic	25	30	0.76
Transmembrane Helix	31	50	0.83
Non-Cytoplasmic	51	58	0.74
Transmembrane Helix	59	80	0.89
Cytoplasmic	81	99	0.85
Transmembrane Helix	100	121	0.90
Non-Cytoplasmic	122	127	0.76
Transmembrane Helix	128	147	0.94
Cytoplasmic	148	156	0.89
Transmembrane Helix	157	180	0.91
Non-Cytoplasmic	181	188	0.79
Transmembrane Helix	189	207	0.96
Cytoplasmic	208	225	0.81
Transmembrane Helix	226	242	0.87
Non-Cytoplasmic	243	249	0.53
Transmembrane Helix	250	266	0.84
Cytoplasmic	267	275	0.76
Transmembrane Helix	276	298	0.88
Non-Cytoplasmic	299	304	0.73
Transmembrane Helix	305	326	0.87
Cytoplasmic	327	333	0.79
Transmembrane Helix	334	355	0.93
Non-Cytoplasmic	356	360	0.80
Transmembrane Helix	361	385	0.85
Cytoplasmic	386	609	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHHSSVLSL MVVVAIAFFV PLLLQRFKLK ALPVVVAEII AGIFVGKSGF NIIEPDMWLQ  60
   61 VLSTLGFIFL MFLSGLEIDF SIFKQKGKKN TTNEPNTFQA ASIIFLFIFI LSYALSLLFV 120
  121 WLGFVDNAMF MTLIISTISL GVVVPTLKEN NLGKTAIGQI ILLVAVIADL VTMILLAVFV 180
  181 GLNSESGQSM WLLLLLFGAG IVIYFVARRF KNIPYLESLK AGSVQIDTRA VFALILILVG 240
  241 LSESVGAENI LGAFLAGVLV SLLSPNEDMV EKLDSIGYGF FIPIFFVMVG VNLEVWSIFN 300
  301 EPSSMLMIPI LIVGLFISKL LPSLVLRKWY PRNIVLGSAI LLTSTLSLVI AAAQIGEKLG 360
  361 IISPSLSASL ILSAVITCIF APILFKKMFP QVETPKPKVS IIGASRITLP LSLDLKREDY 420
  421 DVTLYMIRQN KINDEEAKSH DFPIVKLDEI TIQSLMEQKA FEADRVVVAT SDDEQNLLLA 480
  481 EHAKELGVEH VIASVEDPLL QEKATQEHIA VFSTINSTRI LLRALIDKPS LVRLITTANE 540
  541 TVREVELRSN KYNGLALRRL PFLGDVLVIQ IYRGNKALIP HGDTKLQHGD TLLVTGSKEH 600
  601 IDTMKNILE