YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89207629, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.85
Transmembrane Helix	31	51	0.93
Non-Cytoplasmic	52	70	0.82
Transmembrane Helix	71	93	0.89
Cytoplasmic	94	101	0.73
Transmembrane Helix	102	121	0.63
Non-Cytoplasmic	122	132	0.56
Transmembrane Helix	133	155	0.82
Cytoplasmic	156	177	0.49
Transmembrane Helix	178	200	0.86
Non-Cytoplasmic	201	213	0.47
Transmembrane Helix	214	228	0.69
Cytoplasmic	229	229	0.01
Transmembrane Helix	230	244	0.70
Non-Cytoplasmic	245	278	0.54
Transmembrane Helix	279	300	0.95
Cytoplasmic	301	324	0.59
Transmembrane Helix	325	359	0.69
Non-Cytoplasmic	360	384	0.61
Transmembrane Helix	385	406	0.91
Cytoplasmic	407	427	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKFVTFLDK NLSGPMARLS EQRHLQAIRD GVISALPFII VGSFFLIVAF PPLPKDSFIS  60
   61 VWALKNQTSI LIPYRLTMFI MSLYIAFGIG YNLAKSYKLD ALSGAQLAVC SLLLTLTPEL 120
  121 IDKKGFMLPM TNLGGHGLFV TMIVSILSVE ILRFCKTKNV MIKMPEQVPP SVSRSFEALI 180
  181 PAAFVIILMS LVTVVFSIDL HHVVDKLAAP LVKAGDSYFG VIIPVFLITF FWSFGIHGVS 240
  241 VVGTVARPLW EVYLGKNGEA VASGADQLPF ISPEPLYQWF IWIGGSGATL GLVLAMIVFG 300
  301 RSKYSKALSR TCIVPGIFNI NEPVIFGLPI VLNPILIIPF IITPLVTATV AYSATAMGFV 360
  361 TPTHIMPPWT LPAPIGAYLA TGGDWRAVVL VFINIAISFL IYLPFFKMYD KNMLEIEKNG 420
  421 DGEAVNP