YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89154470, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.28
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKFRSRLLF TFVSLIVFIL VGLGVLLETV FENYYIDHAK ERMIKETQYV AVLAEEQGFD  60
   61 AVLKKPYVFE KLEEKIPASI IFVDEKKKVQ YSGGQPSAFN QEMIKELSSE AAKQRSKVIT 120
  121 QETDQKNEFY HAVFVQDLAG KQGYILVKST IEPLKDVHQK TWGLLIIGFV IACLVVVFLG 180
  181 MKITGQYIRP IESVTKVAIE LAKGNYKARA YESHSDETGM LSKAINILAR NLQEMTLEQE 240
  241 MQQDRLHTLI ENMGSGMILI DSRGYINLVN RSYKETFHVT DEEYLDRLYY ESFHHTEIIE 300
  301 LVEEIFMTEV KVRKQMLLPL GIERKHFEVY GAPIIGTNHE WKGIVLVFHD ITELKKLEQM 360
  361 RKDFLANVSH ELKTPITSIK GFSETLLDGA MDNKKFCEHF LHIILKESER MQGLIEDLLD 420
  421 LSKIEQQGFK LNMGTVDMKE LLEDIHMVLD NKAGEKEISL QVNALKRVSV IGDPGRLKQI 480
  481 FINLINNAIV YTPAGGVVSV ELAEDKYNAY IKVSDTGIGI SKDEIPRIFE RFYRVDKARS 540
  541 RNTGGTGLGL SIVKHLVEAH QGTITVDSEV GEGTTFTVVL PKSATEK

Type	Start	End	Confidence
Signal Peptide	1	27	0.44
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	161	0.77
Transmembrane Helix	162	181	0.76
Cytoplasmic	182	587	0.53