YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89207507, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISKYKLFL ICIVCNVLML CIAHPKVYAQ QNIKVTLDKY IEKFIKEQNI PGASVAIVHH  60
   61 KDVFFTKTWG ITGESEKKVT SKTPFAIGSI SKSLTALAIV KLIEDKKIKL EDSVQQHLPS 120
  121 FKLKDTQSTS NITIQHLLTH TSGINTYEGL ALSDKQLKSS KALKENVMKL SKVKLNAPPG 180
  181 EEYQYSNANY MILGALIEAV TNETYSSYIE KHVFQPLKMN GAAANKESAY EKGYLTGYQS 240
  241 LFGIPRKSVV SYDNAGAPYG YITANLEDMI QFIMFLNHQD HTRFLKKESM DLYLSPLYKI 300
  301 NSEKSYGFGL RTTNINVSET MVWHSGSTPD ARAEMFTLNK SGWAGVILTN KNHVLEETAL 360
  361 TVLKKGIISI LNGEKPGDIP KNIPFTQIVM SIVTLSLIIT SIMLMKKYKR KKTCKKQTWL 420
  421 FVGSIFLLLS SILIPLLIYC TNSPWHTIKL FAADVALLAS ITVILLAVNG LISIFIALRS 480
  481 KKV

Type	Start	End	Confidence
Signal Peptide	1	29	0.95
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	384	0.99
Transmembrane Helix	385	405	0.92
Cytoplasmic	406	417	0.91
Transmembrane Helix	418	439	0.94
Non-Cytoplasmic	440	454	0.84
Transmembrane Helix	455	478	0.90
Cytoplasmic	479	483	0.96