YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89207073, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRVSSKKKK KALCSIPEFI HTMKESSDFV SYNVVDDGTL CLFYYKSTAE SLLINRFILT  60
   61 PIKRELDHIE NISDIANIVT LEDIITAPSI DDIREKLLSG YVLIQLKNDS HSAEYALIRA 120
  121 ESSVLGTRLY NDTENEYSVI GPKVGFVENI DTNIHLLRRN IVTEQLVFKE VIVGSISKTK 180
  181 VVVAYIEGIT NEQHVNTAMQ RLQGIDFDVP FDATMIEQFI SDNSNSPFPV LLPTERLDRS 240
  241 VYALINGGVV ILTDGSPYAL AGPATLLDFF VSPEDYYLPW IAGSFLRLVR FFGAAFSLFS 300
  301 SAIYTAVLTY HYQMIPADLL GPIIYSRANV PFPPVLEALF LEITIELLRE AGARLPTKVG 360
  361 QTIGIVGGIV IGQASVEAAL TSTILLIAVA LSALASFTTP TVKMSSTIRI LRFPLIILAG 420
  421 AFGGVGLIVG FVFILAHLIR LKSLGSPYLL PLYPFRGLGT AEGLLRLPFS QTAGRASFLR 480
  481 PKKKWRYDPN QAKEKRDGEE K

Type	Start	End	Confidence
Cytoplasmic	1	287	0.81
Transmembrane Helix	288	312	0.83
Non-Cytoplasmic	313	377	0.43
Transmembrane Helix	378	402	0.81
Cytoplasmic	403	414	0.78
Transmembrane Helix	415	437	0.94
Non-Cytoplasmic	438	501	0.58