YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228717424, gi...
Protein type:	Transmembrane
Type Confidence:	0.54
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKLKLERFR KIIGLCLLVS LVFIGCFKPL RTFISSPKQL VVFEGQQSEI ASLPVFKAAS  60
   61 TNRNVFTVSS NEQELMVNSH QNGEADMVFQ LAGFPVKKVN VKVLKDFKVI PGGQSIGVKL 120
  121 NTKGVLVVGH HLIQTEKGKV SPGETAGVQI GDMITEINGK TIERMSDVAP FIHNSGETGE 180
  181 PLNLVLLRDG KYIRAKLTPQ KDNGESSYRI GLYIRDSAAG IGTMTFVHPD SMKYGALGHV 240
  241 ISDNDTKKPI QVEDGQIMRS TVTSIERGSH GNPGEKLARF SPDREVIGNI TINSPYGIFG 300
  301 KLNTDMTNGI MDKAMPIALS HQVKEGPAKI LTVIDQDKVE AFDIEVVSTV PQKFPATKGM 360
  361 VIKVTDKRLL AKTGGIVQGM SGSPIVQNGK VIGAVTHVFV NDPTSGYGVH IEWMLHEAGI 420
  421 NIYDQEKKAS

Type	Start	End	Confidence
Cytoplasmic	1	11	0.47
Transmembrane Helix	12	27	0.53
Non-Cytoplasmic	28	430	0.99