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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|163863246, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRRVVKRVF ALLSVLALFF NVFLPKANAE VMTHEKYSMN WSYSNSLGKH IRTEIIKNSS  60
   61 GQIAYCLTLG LKSPNGEDLP EMGKTDNVVY RVLLNGFPQK SIEQLGVANK NEAHYATQLA 120
  121 VWNALGQLDV NELKYENKNV EKAAKAIINA ANTSEDTQDI FMNVIPAEKQ KAELKGEFFE 180
  181 TNLYTVQTNA KSGSYKVVAK NAPNGVKIVS ENGEVKDQLS LGEKFRIQIP KDTKTGEFNL 240
  241 SVAANLTKVQ AIAYRGTDTV QNATVLLERN EEKLSSDLAV NWEAAGSLKI KKVGENGEIL 300
  301 AGAVFEVFNA NNESVGKITT GADGTAELNN LPIGTYTVKE IKAPTGYVSG DKPQTIEVKT 360
  361 GEIGAVQVVN NKVKGNIEIK KLSDSGKMLP NVEFTVFTED GKEVKKVVTK ENGIANVDGL 420
  421 TYGKYYFLET KTPNGYIGNK TKYPFEIKEH NKTLTFTVEN TEVKGSVKLL KVDNEDISKK 480
  481 LEGAVFELKD ASGKVIGEYK TDKNGEVNVK DLAYGKYSFV EKASPNGYVL ITEPIVFEIK 540
  541 EHGKIIELLA VNHLIKGDLE ITKVDVADGN NKLPNAEFTI YNEAGKEVVK GKTDDKGIAK 600
  601 FEKLPFGKYT YKETVAPKGY VLNEEIFSFE IKENGQIIKH IVKDEKIPSV KTTATDKTDG 660
  661 TKEMHTSKSV TIQDKVEYKD LQVGKEYTLK GKLMDKETNK PLVVNGKEVT AETKFTPKEA 720
  721 NGSITLDFTF DATGLEEKEV VVFEELLKDG KVVTTHADIN DKGQTVKFVK PSVKTTATNK 780
  781 ADDGKEIHSK DSITIQDKVE YTNLVVGKEY TVKGKLMNKA INKPLLIDGK EITAETKFIA 840
  841 KEKNGFVTLD FTFVGAEQQG REVVVFEDLL HEGQVIATHT DINDVGQTVR FVEPSIKTTA 900
  901 TNKADGSKEL DASKSVTIQD KVEYKDLIVG KEYVVKGKLM DKATKKPLLV DDKEVTVESK 960
  961 FTAKEKNGSI TLDFTFNASA LQGKEVVVFE ELYQDNILVA IHAEFEDKGQ TVKFKEVKPE1020
 1021 QPKPEQPNQD KNTPTSEQPK EQVKEQPQPK KEIQSKIGWL PQTGADLTSW ISIATGALLL1080
 1081 IVGGVIFLKR KNA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle