YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89155894, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRISIQLGF YFLIVTLLIE SVLFVLLYYS LVNNRVNEEM TALLKRGNSH RDVLEKYFDR  60
   61 QTISHVALME SEAETTVIIT NANKEILAKS NEINTTIKKH IEGMQTRTDH DGAIIENHWK 120
  121 TSNYICTVSP IVVAGKTEGY VYMFLGTESI EEMVNGLTRQ FIIAGVITFL LTAITIFLLS 180
  181 RLLTKPLLHM KQATEKMSKG DLSVSLTTTR NDEIGELAQS IQTLANDLHY MKTERSEFLA 240
  241 SVAHELRTPL TYVRGYADIA SKENTPPEQR LRYLSIIKDE SDYITNLVQD LFSLAQMEKH 300
  301 NFFIQVQEVH LHTFLTRITE KINVMYGEKQ IKVVFTCPSS LLVKLDEQRF EQVMANILNN 360
  361 AYRHSKEHSH INISVTEEHK RISITIEDEG EGIPPEDLPH IFDRFYRVDK ARSRATGGTG 420
  421 LGLSIVKEIV ELHGGNITVT SEIDHGSCFT ISLPSI

Type	Start	End	Confidence
Cytoplasmic	1	7	0.83
Transmembrane Helix	8	31	0.90
Non-Cytoplasmic	32	160	0.83
Transmembrane Helix	161	183	0.87
Cytoplasmic	184	456	0.79