YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|163938502, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.51
Transmembrane Helix	32	52	0.86
Cytoplasmic	53	59	0.47
Transmembrane Helix	60	79	0.89
Non-Cytoplasmic	80	86	0.45
Transmembrane Helix	87	107	0.87
Cytoplasmic	108	123	0.59
Transmembrane Helix	124	145	0.80
Non-Cytoplasmic	146	151	0.64
Transmembrane Helix	152	174	0.92
Cytoplasmic	175	181	0.63
Transmembrane Helix	182	204	0.77
Non-Cytoplasmic	205	215	0.80
Transmembrane Helix	216	238	0.84
Cytoplasmic	239	272	0.95
Transmembrane Helix	273	293	0.90
Non-Cytoplasmic	294	298	0.75
Transmembrane Helix	299	319	0.93
Cytoplasmic	320	333	0.92
Transmembrane Helix	334	354	0.86
Non-Cytoplasmic	355	360	0.78
Transmembrane Helix	361	383	0.92
Cytoplasmic	384	394	0.80
Transmembrane Helix	395	415	0.66
Non-Cytoplasmic	416	423	0.62
Transmembrane Helix	424	447	0.81
Cytoplasmic	448	448	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIQKNVEAV SFSEGNELKS ESFASKIMNV KIGVIPLPLY VVLAAIIYGA SVYNKLPADM  60
   61 IGGFAVIMIM GIFLGDIGMR IPILKNIGGP AILSLFIPSL LVFFNWMNPA SMEAATMLMK 120
  121 KSNFLYLYIS CLVVGSILGM NRKVLVQGFV RMFIPLVVGT LASVAVGLLV GSLFGFEMKQ 180
  181 TFFFIIVPIV SGGIGEGILP LSLAYSDILN ESSATFVSQL IPAAIIGNMF AIVSAGYMKR 240
  241 LGEKRPELSG NGVLVKTDNQ ADLLKEQNTE KPIDFSLMGA GLLIACTFFI FGGFASKFIG 300
  301 IPGAIIMIFS AAIVKYFNLM PAKMEQGAFH LYKFISKNLT WPLMVGLGLL YIPLKDVAAV 360
  361 LSVGYVVVCA SVVLTMVASG FLVGKVMKMY PVESAIVTGC HSGLGGTGDV AILSASNRME 420
  421 LMPFAQISTR LGGAAMVVTA TILLKMFS