YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228651924, gi...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKSDINNET RAKKGRSKKK RLLWFILIPL LIVAMGAGGY SFHIYSKAKS VLSNAYSELG  60
   61 RGDKSSKREK AVKPMTDNIS VLIMGVDESD IREKGYGKAT RTDALLLATI NKNDKSVKLV 120
  121 SIPRDSRVFI KSRDKYDKIT HAHVFGGVDS TIDTVEKFLD VPVDYYVKFN FKSFIKIVDS 180
  181 LGGITVDVPV EFTEQNSSDE ADAIHLKKGR QHLNGEEALA LARTRHIDSD YMRGQRQQLV 240
  241 LEAIAEKALS LNSINKIGSL LDAVDTDLKT NLTFDDMMTI AKNSMDSNLK MDKLQVEGTD 300
  301 KYIGGIYYYV PNEKSVNDIS TTLQEHLGVT NKNEHKKL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	44	0.86
Non-Cytoplasmic	45	338	0.99