YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89205922, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQLFRYPLQ QIPLVAMAII IALSVHEFAH AYVAYKFGDD TAKKQGRLTL SPMAHLDPIG  60
   61 MIAVLILGFG WARPVPVNPY NFKRPRLAGI LVSIAGPISN LILSAIGLII WYSLITFGVL 120
  121 DAMPLAVADT LDQFFQIFIM LNIVLLVFNL LPIPPLDGYR VVEDLAPANI RAKMTQYEKY 180
  181 GSIALLILVI TPLSNYTIQP IFNVVIPYVL VFLQNIIAPI FRLF

Type	Start	End	Confidence
Cytoplasmic	1	11	0.82
Transmembrane Helix	12	30	0.93
Non-Cytoplasmic	31	53	0.88
Transmembrane Helix	54	75	0.87
Cytoplasmic	76	88	0.86
Transmembrane Helix	89	115	0.85
Non-Cytoplasmic	116	133	0.89
Transmembrane Helix	134	153	0.92
Cytoplasmic	154	179	0.83
Transmembrane Helix	180	198	0.82
Non-Cytoplasmic	199	203	0.63
Transmembrane Helix	204	223	0.79
Cytoplasmic	224	224	0.83