YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|163938960, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	24	0.89
Transmembrane Helix	25	45	0.84
Non-Cytoplasmic	46	55	0.75
Transmembrane Helix	56	79	0.86
Cytoplasmic	80	100	0.87
Transmembrane Helix	101	123	0.91
Non-Cytoplasmic	124	132	0.78
Transmembrane Helix	133	153	0.89
Cytoplasmic	154	168	0.78
Transmembrane Helix	169	184	0.86
Non-Cytoplasmic	185	188	0.76
Transmembrane Helix	189	206	0.95
Cytoplasmic	207	280	0.94
Transmembrane Helix	281	301	0.88
Non-Cytoplasmic	302	305	0.74
Transmembrane Helix	306	326	0.90
Cytoplasmic	327	346	0.96
Transmembrane Helix	347	369	0.92
Non-Cytoplasmic	370	373	0.87
Transmembrane Helix	374	396	0.90
Cytoplasmic	397	403	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSTALWKER FRHFLKEVRT YSKYVFNDHL KFIFVFIIGA GAYYYQQWLQ TLTPSFPTAF  60
   61 VMAVLLGLVL TAGSIQTLLK EADLVYLLPV EEKLKPYFTK AFLFTFMIQL YIIAMVAAAL 120
  121 APLYFQQMKQ TGANYIWIVI AFVIVKAWNL FVVWEKSFLT DQSVQKADWF IRFILNGLFV 180
  181 YVLVERTSFI FTGVIVFLMA LYLAVMHQKV KGKPLNWEYL ISEEGKKMML LYRIANMFVD 240
  241 VPALKERVSR RKWLDFILSM IGEKRTYLYL YTRTFLRSGN YFGLYMRLLV LGGIILYFIP 300
  301 FLYGRFIVSL VFLYLIGYQL LTLWKHHRMK VWLDLYPVGG DEKKRDFLTL LNAILIIGSV 360
  361 VFTVIFALAT KDFIMTGILF VVSILFSIGF VYQYGAKRIE RLN