YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89205566, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDFIQTFQE RKVELLSALS EHLQISLISL FFAVIIAVPL GIILTRKERM AEFIIGTSAV  60
   61 MQTVPSLALL GLLIPLVGIG KLPAIIALVV YALLPILRNT YTGIRELDES LIEAARAMGM 120
  121 NSWKRLWKVE LPLALPIIMA GIRTAMVLIV GTATLAALIG AGGLGKLILL GIDRNDHALI 180
  181 ILGAVPAALL ALFFDIVLRI LESPKRSSKR VILTICIVVV MIAAPFLWNT EKKDIVIAGK 240
  241 LGSEPEILIQ MYKQLIEQDT DLQVELKPGL GKTAFVFEAL KSGEVDIYPE FSGTALSTFV 300
  301 KEEPKSTNRD EVYEQARIGM EKKYNMVMLK PMEYNNTYAL AMPKKIADQN NINTISDLGK 360
  361 IAQEAKVGFT LEFADREDGY KGMQKLYNYK FSNVKTMEPK LRYSAIQSGD VNVIDAYSTD 420
  421 SELEQYGLKV LKDDKGLFPP YQGAPLLRKE TLQKYPELEK VLNKLSGKIT DEEMRKMNYE 480
  481 VNVNGKSSEE VAKQFLQKEK LLR

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.89
Transmembrane Helix	23	44	0.92
Cytoplasmic	45	52	0.81
Transmembrane Helix	53	74	0.88
Non-Cytoplasmic	75	81	0.58
Transmembrane Helix	82	101	0.85
Cytoplasmic	102	143	0.87
Transmembrane Helix	144	165	0.83
Non-Cytoplasmic	166	177	0.78
Transmembrane Helix	178	198	0.96
Cytoplasmic	199	209	0.82
Transmembrane Helix	210	228	0.95
Non-Cytoplasmic	229	503	0.97