YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89156522, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENFFLFIIM SICLIILPGP DTAMATKNTL IAGKIGGVKT VFGTCVALLI HTLAAVIGLS  60
   61 ALIVKSALLF SIFKYVGAVY LVYIGIKALL AVRNTEDLNT NDVPINNDNK HTSCFRQGFL 120
  121 TNLLNPKIAV FFLTFLPQFL NPNHNTFIQL LVMGLTYLIL TVIWFAFYIF LIDKISAFMK 180
  181 KPKTQRYIQG ITGIVLIGFG IKLAFERNS

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.69
Transmembrane Helix	5	25	0.84
Cytoplasmic	26	39	0.59
Transmembrane Helix	40	63	0.84
Non-Cytoplasmic	64	66	0.48
Transmembrane Helix	67	86	0.74
Cytoplasmic	87	118	0.75
Transmembrane Helix	119	140	0.70
Non-Cytoplasmic	141	146	0.88
Transmembrane Helix	147	171	0.88
Cytoplasmic	172	186	0.87
Transmembrane Helix	187	205	0.92
Non-Cytoplasmic	206	209	0.87