YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|163864442, gi...
Protein type:	Transmembrane
Type Confidence:	0.57
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIIIISAA TIVIGITSFV YFGSKSPLQN EAKAVENQKH NNHQKEEIPA FQKADHNAKK  60
   61 LDDNFSVVTN PDSALVLVNK HRKLPDGYIP EDLTKPNVPF TSPKDKEKTL LRKDAADALE 120
  121 KMFQAAKEEG LELTAVSGYR SYKRQQSLHN TYIKRQGKAE ADSVSAIPGT SEHQTGLAMD 180
  181 ISSKSAKFQL EPIFGETAEG KWVAEHAHEF GFVIRYLEDK TKTTEYAYEP WHLRYVGNPY 240
  241 ATYIYKHHLT LEEAMEDKK

Type	Start	End	Confidence
Cytoplasmic	1	4	0.47
Transmembrane Helix	5	23	0.54
Non-Cytoplasmic	24	259	0.95