YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89156941, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.91
Transmembrane Helix	9	29	0.91
Non-Cytoplasmic	30	35	0.71
Transmembrane Helix	36	54	0.96
Cytoplasmic	55	72	0.87
Transmembrane Helix	73	97	0.84
Non-Cytoplasmic	98	106	0.72
Transmembrane Helix	107	128	0.87
Cytoplasmic	129	138	0.59
Transmembrane Helix	139	162	0.72
Non-Cytoplasmic	163	195	0.60
Transmembrane Helix	196	215	0.89
Cytoplasmic	216	233	0.55
Transmembrane Helix	234	253	0.89
Non-Cytoplasmic	254	259	0.44
Transmembrane Helix	260	286	0.73
Cytoplasmic	287	306	0.45
Transmembrane Helix	307	329	0.84
Non-Cytoplasmic	330	351	0.50
Transmembrane Helix	352	377	0.82
Cytoplasmic	378	397	0.46
Transmembrane Helix	398	412	0.39
Non-Cytoplasmic	413	416	0.56
Transmembrane Helix	417	450	0.70
Cytoplasmic	451	467	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVRLPSML EIIILLCLFL AVVFSFQTIF DLPIQLALFI SWFLVIALGL RLGFRYQELQ  60
   61 DAITKGISNG LEAILILVAV GALIGTWIAG GVVPTLIYYG LEFIHPSIFL LATLIICSIT 120
  121 SIATGTSWGT VGTAGIAMMA IGEGLGLPLP LVAGAVLSGA YFGDKLSPLS DSTVLAASMA 180
  181 KVDVIAHVRA MLVLDVPAYI ITSIMFTVAG WMYGGDNVDL NRVEFLKESL LKHFDIKIWM 240
  241 LVPAVIVIVL LAMKKPSMPT IAMGALIGAI WATLFQGMNF GEAIGTAYNG FSIQSGVEFV 300
  301 DKLLNRGGIN GMLGSVAVII FGLGFGGLLE KLGVLKVIVS KFEKKLNSAG NVTLSTLIVA 360
  361 FLANIFGCAM YVSLILTPKI MEESYDKLKI DRRVLARNSE VGGTLTSGMV PWSDNGIFMA 420
  421 GILGVSTLSY VPFMWLSFVS LILAVIYGYT GKFIWYVDDA DKGKQAS