YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89157091, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	28	0.97
Transmembrane Helix	29	50	0.94
Non-Cytoplasmic	51	67	0.93
Transmembrane Helix	68	90	0.92
Cytoplasmic	91	99	0.81
Transmembrane Helix	100	120	0.92
Non-Cytoplasmic	121	139	0.85
Transmembrane Helix	140	163	0.87
Cytoplasmic	164	179	0.95
Transmembrane Helix	180	204	0.86
Non-Cytoplasmic	205	222	0.85
Transmembrane Helix	223	244	0.84
Cytoplasmic	245	246	0.64
Transmembrane Helix	247	267	0.86
Non-Cytoplasmic	268	290	0.90
Transmembrane Helix	291	312	0.95
Cytoplasmic	313	341	0.60
Transmembrane Helix	342	367	0.80
Non-Cytoplasmic	368	399	0.49
Transmembrane Helix	400	419	0.90
Cytoplasmic	420	433	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIGFLERYVM PVAGKVAEQR HLQAIRDGIV LTMPFLIIGS FFLIISALPI PGYNDFMAGI  60
   61 FGKNWNVALG YPVGATFNIM SLIAVFGIAY RLGEQYKVDA LAAGALSLVA FLLATPFQVM 120
  121 YMIPNTKESI LVDGVIPAAL MGSQGLFVAM IIAIISTELY RFIVQKKMII KMPETVPPAV 180
  181 TRSFAALVPG FIVVTVIWIL RLIIENTSFG SIHNIVGQIL QEPLSVLGAS LWGAIIAVIL 240
  241 VHVLWSCGIH GATIVGGVMS PVWLSLMDQN RVAFQAGQDV PNTITAQFFD LWIYMGGSGA 300
  301 TLALVVGMLL FARSQQLKSL GRLSIAPGIF NINEMVTFGM PIVMNPILLI PFILVPVVLT 360
  361 IVSYFAMEWG WVARPSGAAV PWTTPILFSG YLGSGGKISG VVLQLVNFAL AFFIYLPFLK 420
  421 IWDKQKVAEE KGE