YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LGT_BACWK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLGSVPQLD RIAVQLGPFP VYWYGVIIGT GVLLGLWLAT REGERLGIHK DTFIDLVLIA  60
   61 VPIAILFARM YYVIFEWEYY SQNPSQIINI RQGGLAIHGG LIGAVITGIL FAKRRGLSFW 120
  121 KLADIAAPSI LLGQAIGRWG NFMNQEAHGD EVTRQFLEGL HLPDFIINQM YIDGVYYHPT 180
  181 FLYESLWNFA GVILLLALRK VNLRRGELFF TYLIWYSVGR FFVEGLRTDS LMLGPLRIAQ 240
  241 VMSIGIVVIS IIFIIVRRKM GQADKRYLEN

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.94
Transmembrane Helix	21	40	0.96
Cytoplasmic	41	51	0.94
Transmembrane Helix	52	73	0.93
Non-Cytoplasmic	74	93	0.86
Transmembrane Helix	94	112	0.95
Cytoplasmic	113	118	0.86
Transmembrane Helix	119	138	0.89
Non-Cytoplasmic	139	179	0.90
Transmembrane Helix	180	198	0.92
Cytoplasmic	199	207	0.84
Transmembrane Helix	208	226	0.91
Non-Cytoplasmic	227	235	0.81
Transmembrane Helix	236	256	0.95
Cytoplasmic	257	270	0.95