YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|228716498, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQIVILGA GYGGLLAALN VRKYYSKSEA QVTVINQYPT HQIITELHRL AAGNVAEQAI  60
   61 AMPLTKLFKG KDIDLKIATV ESFSVDSKEI KLAGGTTLSY DALVVALGSK TAYFGIPGLE 120
  121 ENSMVLKSAA DANKIYKHVE DRIREYAKTK NEADATIVIG GGGLTGVELV GELADIMPKL 180
  181 AKSHGVNPKE VKLLLVEAGP KILPVLPDHL IERATASLEA RGVTFLTGLP VTNVAGNEID 240
  241 LKDGQKIVAN TFVWTGGVQG NPLIGESGLE VNRGRATVDA HLQSTSHKDV FVAGDSAVVF 300
  301 SPDGRPYPPT AQIAWQMGEL IGYNLYAALE GKAFEEFAPI NSGTLASLGR KDAVATIGAS 360
  361 NTPLKGLPAS LMKEASNVRY LSHIKGLFSL AY

Type	Start	End	Confidence
Signal Peptide	1	17	0.76
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	392	0.99