YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|163861250, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFALKIGII FLQLEVWGMR VKKIWTKELF ICFCLAVILF VPVHTFAEEK REWRDEVIYS  60
   61 IMIDRFNNGE SKNDKQLDVG NLEGYQGGDI RGIIKRLDYI KEMGFTTIML SPLFESEKYD 120
  121 GLSVRNFQKV NEHFGTENDV KELVNEAHKK GMKVVFQFPY EENEQQLIDS MKWWIKEVDL 180
  181 DGSYVIHSEK KPRAFWDEVQ KDLQKVKKDF HIMTKEDNEY YKKIVESFSK ADMSVKPLYD 240
  241 VSGKEEEFAT FLDNQETKRF ARIAKENMYY PPSRLKLAIT YLLTSPGIPN FYYGTEIALD 300
  301 GGDAPDNRRL MDFKSDEKFM QHITKLGELR QARPSLRRGT FELLYDKDGM SILKRKYKDE 360
  361 VTLVAINNTK ETKKVSLPVS AIGEKQELRG LLEDEIIREE NGKFYLVLKR EESNVYKVSE 420
  421 ETGVNWLFIS LIVGVNVLFI AFLIAVKKKR SSV

Type	Start	End	Confidence
Signal Peptide	1	47	0.79
N-region	1	38
H-region	39	44
C-region	45	47
Cleavage Site	47	48
Non-Cytoplasmic	48	422	0.99
Transmembrane Helix	423	446	0.90
Cytoplasmic	447	453	0.97