YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229057006, gi...
Protein type:	Transmembrane
Type Confidence:	0.70
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLIWKVISN VISFVLFAVM VCLAFVVISS KASGGDPTVM GYQFKSVLSG SMEPTFLTGS  60
   61 IIAIEPTKDG SKYKKGDVIT FKEKDDKIIT HRIIGVKDTN GKVMYETKGD NNNGPDLAPV 120
  121 LAENVIGKYA DITVPYVGYG LNYASSKAGA ALLLIIPGVF LLGYSAISIF GAIRSIDGEK 180
  181 KDKKVEQSV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.58
Transmembrane Helix	10	30	0.65
Non-Cytoplasmic	31	148	0.92
Transmembrane Helix	149	173	0.82
Cytoplasmic	174	189	0.85