YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|163939207, gi...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTMVQKLWL TVVCAVCVTV SFLYFVSLYS YEKLYVDNLK DSLVMEGKRL ATQYDKREGV  60
   61 STFEEKVRAY DQISSSDVLF VYNPRDLSAC LPFDIHHHSL ISEGDRQALL DGKTVTKIGY 120
  121 EEHFDRNIMG VVIPVLDNKK LVGIVYSYIP LKSIKDLIFD MGLILAPLAL AMILITIWIG 180
  181 RKIIIAITRP LSQMERVANH LATGDFSERI TISSEDEIGR LGKAFNKMAN SLETEDVKRK 240
  241 EFLANVSHEL RTPLSYIKGY SEAILDGVAK GPQQEKVTQL IHKEAGRMQR LVHDLLDLAQ 300
  301 LEGEHFPLKK QPIVFSQLIE DVLNTYELQF VEKNLRISTN LNPEIIVMID EDRMQQVLHN 360
  361 VLDNAIRYTN QNGDIIITLK QIDDYCELHI KDTGIGIDRE HLENLGERFY RVDKARSRQH 420
  421 GGTGLGLAIV RQIVHIHDGE WRIESEKGKG TTVSIKLKAQ DEESIF

Type	Start	End	Confidence
Cytoplasmic	1	7	0.48
Transmembrane Helix	8	28	0.84
Non-Cytoplasmic	29	156	0.59
Transmembrane Helix	157	180	0.84
Cytoplasmic	181	466	0.56