YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89203689, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSRKWVRLF FTTLLLGGIS TIFIGFILEW DKYAKFFQDF DGKEILAVAF WLMGVGFIFS  60
   61 VISQMGFFAY LTVHRFGLGM FRSSSLWNAV QIFFIAFVLF DFVYLRSVLI ANGEVSLGNN 120
  121 ILVAGMLFLF GLFVAYIKSK ETNKKAFIPA LFFMVVVTIL EWVPALRIND TDWLYLMVIP 180
  181 LLLCNAYQLL ILHRLIGQES KAAS

Type	Start	End	Confidence
Cytoplasmic	1	8	0.88
Transmembrane Helix	9	28	0.97
Non-Cytoplasmic	29	47	0.91
Transmembrane Helix	48	71	0.91
Cytoplasmic	72	84	0.85
Transmembrane Helix	85	105	0.89
Non-Cytoplasmic	106	116	0.77
Transmembrane Helix	117	137	0.93
Cytoplasmic	138	145	0.92
Transmembrane Helix	146	166	0.94
Non-Cytoplasmic	167	172	0.90
Transmembrane Helix	173	192	0.94
Cytoplasmic	193	204	0.82