YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152024899, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLPNKITIS RICLIPIFLV IMIAPFDWGS YTIGNVDLPI QHLIGALIFI IASATDWIDG  60
   61 HLARKYNLVT NLGKFLDPLA DKLLVSAALI TLVEMQYVPA WIVIVIISRE FAVTGLRLVL 120
  121 AGTGEVVAAN MLGKIKTWTQ IIAISAYLLH DVPLNLIHIP VADIFIWIAL IFTVISGYDY 180
  181 FWKNRAVFVN SK

Type	Start	End	Confidence
Cytoplasmic	1	6	0.98
Transmembrane Helix	7	29	0.86
Non-Cytoplasmic	30	37	0.86
Transmembrane Helix	38	58	0.88
Cytoplasmic	59	82	0.81
Transmembrane Helix	83	107	0.61
Non-Cytoplasmic	108	155	0.43
Transmembrane Helix	156	182	0.78
Cytoplasmic	183	192	0.80