YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89203489, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.57
Transmembrane Helix	8	35	0.82
Non-Cytoplasmic	36	44	0.52
Transmembrane Helix	45	64	0.83
Cytoplasmic	65	190	0.54
Transmembrane Helix	191	209	0.29
Non-Cytoplasmic	210	228	0.73
Transmembrane Helix	229	252	0.91
Cytoplasmic	253	260	0.72
Transmembrane Helix	261	283	0.82
Non-Cytoplasmic	284	296	0.45
Transmembrane Helix	297	318	0.73
Cytoplasmic	319	325	0.50
Transmembrane Helix	326	346	0.89
Non-Cytoplasmic	347	355	0.55
Transmembrane Helix	356	377	0.91
Cytoplasmic	378	386	0.62
Transmembrane Helix	387	412	0.87
Non-Cytoplasmic	413	448	0.73
Transmembrane Helix	449	468	0.94
Cytoplasmic	469	474	0.92
Transmembrane Helix	475	495	0.95
Non-Cytoplasmic	496	780	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRQWGYIAI SFVIGIAIAC SSSQLLGTIL FGCYFLFCTY RTSRQTLMFC IVACLSSFLY  60
   61 TSYIEQENKP SIRYDLESIT GVILNTPLIN GNRLSFQIED NSKNKVQLFY NMQSEKEKNV 120
  121 LRGLRVGMVC TFRGALKEPP SARNFYGFDY KNYLYKQRIH FLFEATAIMD CSNNHVTFVN 180
  181 WLFQLRQKAT LAVAEMFPEQ SGAFMNALLF GDRQFMSYEV EQQYQQFGLI HLLAISGSHI 240
  241 VLLSAIVYFV LLRIGVTRER TTTALIICIP LYMFFAGASP SVMRASIMGT LLLIGVMHSF 300
  301 RLFSIDAISV TAIFMLIYDP YMLFDIGFQF SFIGSLALLL SANTLLQHNR GVIQNAIILS 360
  361 LISQLASIPI TLYHFGYFSP YSIPLNLIYV PFLSCIVLPC SIIIFLCMMI FPPLAKGIAH 420
  421 LLSICLRMSN DVLQYCEAFP FVRFTFGQTP PFLVVLYSFS IIIICIVWER AIRKIFLYFA 480
  481 FGIFFFLCMC HYLSPYFRAS GSVTFIDVGQ GDAILIRLPY DKEVYLIDTG GTIPIKKEHW 540
  541 QQKKHEFSIG DDVLIPFLQK QGIRTIDKLI VTHGDVDHMG AAKEVVAALD VKEIIFGKKR 600
  601 KDSVLEAELK YLAQKKDMRI NKVKEGDGWK VDEVEFRVLS PEGSETSDND SSIVLWAKIG 660
  661 EFTWLFTGDL EEKGEERIVK QYPNLRADIL KVGHHGSKTS STAPFLRLIQ PKKAIISVGE 720
  721 HNRYGHPHDQ VLKRLEEMQV EVWRTDREGA ILYTFQGKNG TFQSKLTYDE TQKRMKKDRK 780
  781