YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152974373, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRISVQLGF YFLIVTLLIE SVLFILLYYS LVNTRVNEEM NALLKRGNSH RDVLEKYFDS  60
   61 QTISHVALME SEAETTAVIT NADKKVLAKS NYIDSTIKMY ITKMKIRPSH NGTIIDSHWK 120
  121 TSNYICTVSP IVIGKKVQGY VYMFLGTNSI KQMVNGLTKQ FMIAGLITFL LTVITIFLLS 180
  181 RLLTKPLIRM KHATEKMSRG DLSISLRTSR NDEIGELASA IQTLANDLHY MKKERSEFLA 240
  241 SVAHELRTPL TYVKGYAEIA QKRTTQPTER EKYLSIIKEE ADYITNLVQD LFILAQMEKH 300
  301 NFLIEAKRID LEKFLNRIVT KVNGIYVQKH LTVSLTCPPS LFITLDERRF EQVIMNILNN 360
  361 AYRHSAEYSV ITITVTAYVS HIKISIQDTG EGIPPEDIPH IFERFYRVDK ARSRATGGTG 420
  421 LGLAIVKEIV ELHDGHITVS SKLNKGTCFT ITLPREKEST MM

Type	Start	End	Confidence
Cytoplasmic	1	7	0.83
Transmembrane Helix	8	31	0.90
Non-Cytoplasmic	32	160	0.84
Transmembrane Helix	161	183	0.89
Cytoplasmic	184	462	0.83