YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89203315, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGMFCKRFI AMVTVLTLFF SAFVTYSSVS AETSSALNIE AGAAILVEAD SGKILYQKNA  60
   61 DELLAIASMT KMMSEYLVHK AVDTGKLKWD QKIKVSEYAH KISQDRSLSN VPLENGGSYT 120
  121 VKELYEAMAI YSANGATIAL AEAVAGKEAD FVKMMNDQAK EFGLKNYKFV NSTGLTNKDL 180
  181 KGQHPEGTTP DEENKMSARD VAILAQHLIQ DFPKVLDTAK IPKKVFQEGG KYPVKMDNWN 240
  241 WMLKGLIKQY EGVDGLKTGS TPEAGDCFTG TAERNGMRLI SVVIKTNSHT ARFDETKKLF 300
  301 DYGFTNFDVK KVYPKGSSVK GYETVRVENA KDKDVAVETK QAITLPMPKG SKDVYKTEFK 360
  361 EVGKEKEAPI KKGTTLGQMV VSPKDASDPG FLSGKSLHVD LVTKSEVEQA NWFVRSMRGI 420
  421 GSFFSDIWNS AVDTVKGWF

Type	Start	End	Confidence
Signal Peptide	1	31	0.97
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	439	0.99