YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152976188, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQRIITGVI AAALFIPIVF YGGLPFTVLV YALASIGLYE LIRMNKLPLI SVPTVLAAVL  60
   61 LWIILVPSNT IGAFDWIGLD KLEITFLIVL LLLSYTVLSK NTFTFDNAAF LLMATTYVAM 120
  121 GFLYLNETRI AGIHYVFYAL FVIWATDSGA YFIGKAIGKR KLWPEISPNK TIEGSLGGIV 180
  181 CGIVVAFVYN LFFQVQENIA MLIIVTIAIS IFGQIGDLVQ SAFKRHYGVK DSGTILPGHG 240
  241 GILDRTDSWL FVLPILHFLH FIS

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.71
Transmembrane Helix	10	35	0.82
Cytoplasmic	36	46	0.63
Transmembrane Helix	47	66	0.90
Non-Cytoplasmic	67	76	0.61
Transmembrane Helix	77	98	0.81
Cytoplasmic	99	106	0.62
Transmembrane Helix	107	125	0.87
Non-Cytoplasmic	126	132	0.76
Transmembrane Helix	133	154	0.92
Cytoplasmic	155	171	0.88
Transmembrane Helix	172	193	0.90
Non-Cytoplasmic	194	198	0.86
Transmembrane Helix	199	219	0.92
Cytoplasmic	220	263	0.76