YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152024987, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.99
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKGKKILLC VTGGIAVFKA AALTSKLTQA GALVKVIMSE SAMKFVTPLT FQALSRHDVY  60
   61 TDTFDEKDCA VIAHIDLADW ADVILVAPAT ANCIGKLANG IADDMITTTL LATTAPVWIA 120
  121 PAMNVHMYEN PIVQKNMRTL RNLGYTFIEP GEGFLACGYV AKGRLEEPEV IMARLEEQFS 180
  181 AGKTLRGKRI LITAGPTREK IDPVRFMTNF SSGKMGYAIA EAAANLGADV ILVSGPTALT 240
  241 PPINVTTIQV ESAQDMLEAV LQHYSGMDVV IKTAAVADYR PKFVHNHKMK KQDGDAVIEL 300
  301 ERTTDILKTL GERKEHQLLV GFAAETKNIE EYATRKLREK NADLIVANDV KAQGAGFGTD 360
  361 TNIVTMYRKD GNVIELPLLS KKEVAYEILK QIESMLEDDC I

Type	Start	End	Confidence
Signal Peptide	1	22	0.98
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	401	0.99