YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89203017, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.82
Transmembrane Helix	6	24	0.94
Cytoplasmic	25	30	0.76
Transmembrane Helix	31	50	0.83
Non-Cytoplasmic	51	60	0.72
Transmembrane Helix	61	83	0.86
Cytoplasmic	84	97	0.94
Transmembrane Helix	98	121	0.86
Non-Cytoplasmic	122	127	0.69
Transmembrane Helix	128	147	0.94
Cytoplasmic	148	156	0.90
Transmembrane Helix	157	180	0.91
Non-Cytoplasmic	181	188	0.81
Transmembrane Helix	189	208	0.95
Cytoplasmic	209	225	0.80
Transmembrane Helix	226	242	0.84
Non-Cytoplasmic	243	244	0.51
Transmembrane Helix	245	266	0.71
Cytoplasmic	267	275	0.65
Transmembrane Helix	276	298	0.88
Non-Cytoplasmic	299	304	0.62
Transmembrane Helix	305	326	0.88
Cytoplasmic	327	333	0.67
Transmembrane Helix	334	355	0.93
Non-Cytoplasmic	356	361	0.67
Transmembrane Helix	362	385	0.87
Cytoplasmic	386	609	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQHSSVLSL MIVVAIAFFI PLLLQRFKLK AIPVVVAEII AGIFVGKSGF NVIEPDMWLE  60
   61 VLSTLGFIFL MFLSGLEIDF SIFKQKEKKN KTNEPNTFQV ASTIFLFIFI LSYGLSLMFV 120
  121 WLGFVDSALF MTLIISTISL GVVVPTLKEN NLGKTAIGQI ILLVAVIADL VTMILLAVFV 180
  181 GLNSESGQSM WLLLVLFGAG IVIYFVAIRF KNIPYLESLK AGSVQIDTRA VFALILILVG 240
  241 LSESVGAENI LGAFLAGVLV SLLSPNEEMV EKLDSIGYGF FIPIFFVMVG VNLEVWSIFK 300
  301 EPSSMLMIPI LIIGLLISKL LPSLILRKWY PRNIVLGSAI LLTSTLSLVI AAAQIGEKLK 360
  361 IISPSLSAAL ILSAVITCIF APVLFKKMFP KVETPKPKVS IIGASRITLP LSLDLKREGY 420
  421 DVTLYMMRQN KLNTEESQSH DFPIVKLDTI SIESLEEKKA FDADRVVVAT SDDEQNLLLA 480
  481 EHAKELGVEH VIASVEDPLL QEKATQEHIA VFSTINSTRI LLRALIDKPS LVHLITTSNE 540
  541 TVREVELRSN KYNGLPLRRL PFLGDVLIIQ IYRGKKALIP HGDTKLQHGD TLLVTGSKEH 600
  601 IDTLKSILE