YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152977464, gi...
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKIVLWIL GVIGIMIIGG GIYAYNIYSS VSKTLDEVHK PLKRDENNKQ EEKISKSKPV  60
   61 SILLLGADER GTDKGRSDSL MVITLNPQTN SMKTLSIPRD TYTEIVGKGK KDKINHAYAF 120
  121 GGVDMSVATV ENFLNIPINY YIEVNMEGFK DIVDAVDGVD VNNDLEFTQN KHHFAKGNIH 180
  181 LTGDEALAYT RMRKADSRGD FGRQMRQRQV MQAVIKKGAS FSSLTNYGDV LNAIQKNVKT 240
  241 NLTQDQMFEM QKNYKDCLKN SEEIQIPGDG HKAADGIWYY YVTDHAKQEL TNKLKAHLEL 300
  301 TQ

Type	Start	End	Confidence
Cytoplasmic	1	5	0.86
Transmembrane Helix	6	25	0.90
Non-Cytoplasmic	26	302	0.99