YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152977685, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.81
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKIGLLAM VIALMAIAAG CSEVNQPITP KSTGIWNEYF VYPLSQLITY FANLFGSNYG  60
   61 LAIVITTLII RFALLPLMIK QTKSTKAMQA LQPEMVKLKE KYSSKDQATQ QKLQQEMMQL 120
  121 YQKHGVNPLA GCLPIFIQMP ILFAFYHAIM RTAEIKQHSF LWFDLGHADP YYILPIVAAI 180
  181 TTFIQQKIAM TGTVGQNPQM AMMVWLMPIM ILIFAINFPA ALSLYWVVGN IFGIAQMYMI 240
  241 KGPEIKGSKA GGSSK

Type	Start	End	Confidence
Signal Peptide	1	21	0.77
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	54	0.87
Transmembrane Helix	55	75	0.86
Cytoplasmic	76	125	0.95
Transmembrane Helix	126	149	0.88
Non-Cytoplasmic	150	169	0.87
Transmembrane Helix	170	189	0.85
Cytoplasmic	190	201	0.79
Transmembrane Helix	202	229	0.82
Non-Cytoplasmic	230	255	0.63