YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152977498, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEHGKLVDFL GLTFDLSAVI MVTVAAVIVF LIAVIGTRSL ALRPTGMQNF LEWVLDFVKG  60
   61 IIGSTMDWKT GGRFLTLGVT LMMFIFVSNM LGLPFMFSTT EAGEHIAWWR SPTSDPAVTL 120
  121 TLAVMVVTLT HYYGIKMKGT KEYIKGYFQP MKFLFPLKVI EEFANTLTLG LRLFGNIYAG 180
  181 EILLTLLAQL GASGAFGALG AVVPMLAWMG FSVFVGSIQA FIFTMLTMVY MAHKVSHDH

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.87
Transmembrane Helix	16	37	0.91
Cytoplasmic	38	73	0.88
Transmembrane Helix	74	96	0.90
Non-Cytoplasmic	97	115	0.89
Transmembrane Helix	116	135	0.94
Cytoplasmic	136	176	0.91
Transmembrane Helix	177	201	0.78
Non-Cytoplasmic	202	206	0.60
Transmembrane Helix	207	231	0.84
Cytoplasmic	232	239	0.84