YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152024875, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.95
Transmembrane Helix	9	29	0.90
Non-Cytoplasmic	30	64	0.90
Transmembrane Helix	65	85	0.95
Cytoplasmic	86	94	0.80
Transmembrane Helix	95	115	0.94
Non-Cytoplasmic	116	124	0.82
Transmembrane Helix	125	148	0.90
Cytoplasmic	149	157	0.90
Transmembrane Helix	158	178	0.95
Non-Cytoplasmic	179	198	0.90
Transmembrane Helix	199	218	0.86
Cytoplasmic	219	247	0.81
Transmembrane Helix	248	274	0.80
Non-Cytoplasmic	275	287	0.62
Transmembrane Helix	288	308	0.84
Cytoplasmic	309	314	0.56
Transmembrane Helix	315	336	0.88
Non-Cytoplasmic	337	340	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRDLNKRYA MTMGITISFI LGAIYISVTN GTFDISIIDV FRTIFRINPV PEHDLVIFDF  60
   61 RLPRIIIAAF VGLGLGIAGA VVQGITRNGL ADPGILGVNA GAGTAIVIFM FFFQGQIKST 120
  121 DWVSIMMMPL FGLVGGLGAA ILIYMFSWRN GRLDSQRLLL TGIAIGSGFG AFSMYISLKM 180
  181 KATDFEMAAV WVSGSIYNSN WQYIVAMLPW LIILIPIVKR KAYLLDLFQL EETSITSLGV 240
  241 SVEREKSILL LSSIGLVSAC VSVAGSIGFV GLMAPHIAKR LVGIQHKYVI PTCGVIGMLL 300
  301 VIVSDFIAKT IFTPVELPVG IVISIIGVPY FLYLLYKAKA