YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152024319, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	30	0.92
Transmembrane Helix	31	50	0.95
Non-Cytoplasmic	51	70	0.87
Transmembrane Helix	71	93	0.90
Cytoplasmic	94	101	0.79
Transmembrane Helix	102	121	0.87
Non-Cytoplasmic	122	132	0.89
Transmembrane Helix	133	155	0.89
Cytoplasmic	156	175	0.91
Transmembrane Helix	176	198	0.90
Non-Cytoplasmic	199	218	0.87
Transmembrane Helix	219	241	0.87
Cytoplasmic	242	252	0.75
Transmembrane Helix	253	272	0.83
Non-Cytoplasmic	273	278	0.80
Transmembrane Helix	279	300	0.94
Cytoplasmic	301	334	0.65
Transmembrane Helix	335	366	0.72
Non-Cytoplasmic	367	384	0.56
Transmembrane Helix	385	406	0.90
Cytoplasmic	407	427	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKFISFLEN NLSSPMARLS EQRHLQAIRD GVISALPFII VGSFFLIVAF PPLPKDSFIS  60
   61 VWAAKHQTSI LIPYRLTMFI MSLYIAFGIG YNLAKSYKLD SLSGAQLAVC SLLLTLTPEL 120
  121 IDQKGFMLPM TNLGGHGLFV TMIVSILSVE ILRFCKSKDV MIKMPEQVPP SVSRSFEALI 180
  181 PAAFVIIIIS IITVVFRIDL HHVVDQLAAP LVKAGDSYFG VILPVFLITF FWSFGIHGVS 240
  241 VVGTVARPLW EVYLGKNSAA VADGASSIPF IAPEPLYQWF IWIGGSGETL GLVLAMIIFG 300
  301 KSKYSKALSR SCIVPGIFNI NEPVIFGLPI VLNPVLIIPF IITPLITATV AYTATAIGLV 360
  361 TPTYIMPPWT LPAPIGAYLA TGGDWRAIVL VFINIAISFF IYLPFFKMYD KNMLEVENND 420
  421 NENAVKV