YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152022728, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.96
Transmembrane Helix	18	38	0.91
Non-Cytoplasmic	39	66	0.91
Transmembrane Helix	67	89	0.84
Cytoplasmic	90	111	0.92
Transmembrane Helix	112	132	0.91
Non-Cytoplasmic	133	146	0.76
Transmembrane Helix	147	167	0.93
Cytoplasmic	168	174	0.89
Transmembrane Helix	175	196	0.89
Non-Cytoplasmic	197	211	0.89
Transmembrane Helix	212	234	0.91
Cytoplasmic	235	270	0.92
Transmembrane Helix	271	290	0.92
Non-Cytoplasmic	291	309	0.88
Transmembrane Helix	310	330	0.93
Cytoplasmic	331	364	0.97
Transmembrane Helix	365	387	0.91
Non-Cytoplasmic	388	395	0.80
Transmembrane Helix	396	415	0.89
Cytoplasmic	416	433	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRTISNFMR VAEIRRKIFF TLAMLIVFRI GTFIPVPFTN GDVLKAQDQL NALGILNTFG  60
   61 GGALKNFSIF AMGIMPYITA SIIVQLLQMD VVPKFAEWSK QGEMGRRKLT QFTRYFTIVL 120
  121 AFIQAFGMSI GFNGMVGGQL ILNPGWGTYL YIATVLTAGT AFLMWLGEQI TAKGVGNGIS 180
  181 ILIFAGIAAA IPNVLSQVYL QQFQNVGDQL FMSIVKVVLI LLAVLAVVVG VIYIQQAVRK 240
  241 IPIQYAKRVT GGNGSYAGAQ NTHLPLKVNS AGVIPVIFAV SFLITPPTIA QFFPKHDISQ 300
  301 WIIANFNYSH PVGMIVYVAL IVAFTYFYAF VQVNPEQMSE NLNKQGGYVP GIRPGKNTEQ 360
  361 YLTKILYRLT FVGSIFLAAI AILPVIFTKL GNLPPSAQIG GTSMLIVVGV ALETMKQLES 420
  421 QLVKRHYKGF IKQ