YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152025916, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRNTNLQAMI ESAILAAFAL IIDILPLSIK IPTGGSVSFA MIPIFIIAYR WGFKMAFLGG  60
   61 LIWGLLQIVF GDAYILTPIQ AVIEYFIAFA FIGFAGLFYR SIQKAISNNQ GKKVLLYIIL 120
  121 GTLIGSFARY FCHFIAGIIF WGQYAPKGQS AFLYSFIVNG SIMLASFALC TVLLLLLYTT 180
  181 SPRLFQSIRA YPIHSKNKSA

Type	Start	End	Confidence
Cytoplasmic	1	7	0.58
Transmembrane Helix	8	27	0.83
Non-Cytoplasmic	28	30	0.47
Transmembrane Helix	31	53	0.67
Cytoplasmic	54	55	0.59
Transmembrane Helix	56	76	0.82
Non-Cytoplasmic	77	80	0.77
Transmembrane Helix	81	102	0.88
Cytoplasmic	103	113	0.95
Transmembrane Helix	114	137	0.89
Non-Cytoplasmic	138	155	0.83
Transmembrane Helix	156	179	0.89
Cytoplasmic	180	200	0.95